Biopython: freely available Python tools for computational molecular biology and bioinformatics
نویسندگان
چکیده
منابع مشابه
Biopython: freely available Python tools for computational molecular biology and bioinformatics
SUMMARY The Biopython project is a mature open source international collaboration of volunteer developers, providing Python libraries for a wide range of bioinformatics problems. Biopython includes modules for reading and writing different sequence file formats and multiple sequence alignments, dealing with 3D macro molecular structures, interacting with common tools such as BLAST, ClustalW and...
متن کاملChemoPy: freely available python package for computational biology and chemoinformatics
MOTIVATION Molecular representation for small molecules has been routinely used in QSAR/SAR, virtual screening, database search, ranking, drug ADME/T prediction and other drug discovery processes. To facilitate extensive studies of drug molecules, we developed a freely available, open-source python package called chemoinformatics in python (ChemoPy) for calculating the commonly used structural ...
متن کاملPyDPI: Freely Available Python Package for Chemoinformatics, Bioinformatics, and Chemogenomics Studies
The rapidly increasing amount of publicly available data in biology and chemistry enables researchers to revisit interaction problems by systematic integration and analysis of heterogeneous data. Herein, we developed a comprehensive python package to emphasize the integration of chemoinformatics and bioinformatics into a molecular informatics platform for drug discovery. PyDPI (drug-protein int...
متن کاملFreely available compound data sets and software tools for chemoinformatics and computational medicinal chemistry applications
We have generated a number of compound data sets and programs for different types of applications in pharmaceutical research. These data sets and programs were originally designed for our research projects and are made publicly available. Without consulting original literature sources, it is difficult to understand specific features of data sets and software tools, basic ideas underlying their...
متن کاملTraining for bioinformatics and computational biology
The explosive increase in biological information produced by large-scale genome sequencing and gene/protein expression projects has created a demand that greatly exceeds supply for researchers trained both in biology and in computer science—two quite different disciplines. National funding agencies both in the US and Europe have committed significant resources to Bioinformatics training. Dozens...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Bioinformatics
سال: 2009
ISSN: 1367-4803,1460-2059
DOI: 10.1093/bioinformatics/btp163